venpopov. To fix this you can add URL: https://popov-lab.r-universe.dev/chkptstanr to the package DESCRIPTION file. See also theR-universe documentation.Package: chkptstanr 0.2.0
Vencislav Popov
chkptstanr: Checkpoint MCMC Sampling with 'Stan'
Fit Bayesian models in Stan <doi:10.18637/jss.v076.i01> with checkpointing, that is, the ability to stop the MCMC sampler at will, and then pick right back up where the MCMC sampler left off. Custom 'Stan' models can be fitted, or the popular package 'brms' <doi:10.18637/jss.v080.i01> can be used to generate the 'Stan' code. This package is fully compatible with the R packages 'brms', 'posterior', 'cmdstanr', and 'bayesplot'.
Authors:
chkptstanr_0.2.0.tar.gz
chkptstanr_0.2.0.zip(r-4.7)chkptstanr_0.2.0.zip(r-4.6)chkptstanr_0.2.0.zip(r-4.5)
chkptstanr_0.2.0.tgz(r-4.6-any)chkptstanr_0.2.0.tgz(r-4.5-any)
chkptstanr_0.2.0.tar.gz(r-4.7-any)chkptstanr_0.2.0.tar.gz(r-4.6-any)
chkptstanr_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
chkptstanr/json (API)
| # Install 'chkptstanr' in R: |
| install.packages('chkptstanr', repos = c('https://popov-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/venpopov/chkptstanr/issues
Pkgdown/docs site:https://venpopov.github.io
Last updated from:94eea9a665 (on v0.2.0). Checks:7 ERROR, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 271 | ||
| source / vignettes | OK | 255 | ||
| linux-release-x86_64 | ERROR | 262 | ||
| macos-release-arm64 | ERROR | 224 | ||
| macos-oldrel-arm64 | ERROR | 223 | ||
| windows-devel | ERROR | 390 | ||
| windows-release | ERROR | 258 | ||
| windows-oldrel | ERROR | 287 | ||
| wasm-release | OK | 168 |
Exports:chkpt_brmschkpt_setupchkpt_stancombine_chkpt_drawscreate_folderextract_chkpt_drawsextract_hmc_infoextract_stan_statemake_brmsfitreset_checkpoints
Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscpp11crayondescdiffobjdigestdistributionaldplyrfarverfsfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMatrixmatrixStatsmgcvmvtnormnleqslvnlmenumDerivotelparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackreshape2rlangrstanrstantoolsS7scalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewaldowithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Checkpoint Sampling: brms | chkpt_brms |
| Checkpoint Setup | chkpt_setup |
| Checkpoint Sampling: Stan | chkpt_stan |
| Combine Checkpoint Draws | combine_chkpt_draws |
| Create Folder for Checkpointing (Deprecated) | create_folder |
| Extract Draws from 'CmdStanMCMC' Objects | extract_chkpt_draws |
| Extract HMC Sampler Information | extract_hmc_info |
| Extract Stan State | extract_stan_state |
| Make 'brmsfit' Object | make_brmsfit |
| Print 'chkpt_brms' Objects | print.chkpt_brms |
| Print 'chkpt_setup' Object | print.chkpt_setup |
| Delete Checkpoint Folders containing samples, keep the model | reset_checkpoints |
