Package: chkptstanr 0.2.0

Vencislav Popov

chkptstanr: Checkpoint MCMC Sampling with 'Stan'

Fit Bayesian models in Stan <doi:10.18637/jss.v076.i01> with checkpointing, that is, the ability to stop the MCMC sampler at will, and then pick right back up where the MCMC sampler left off. Custom 'Stan' models can be fitted, or the popular package 'brms' <doi:10.18637/jss.v080.i01> can be used to generate the 'Stan' code. This package is fully compatible with the R packages 'brms', 'posterior', 'cmdstanr', and 'bayesplot'.

Authors:Vencislav Popov [aut, cre, cph], Donald Williams [aut], Tyler Matta [aut], NWEA [cph]

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chkptstanr/json (API)

# Install 'chkptstanr' in R:
install.packages('chkptstanr', repos = c('https://popov-lab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/venpopov/chkptstanr/issues

On CRAN:

4.97 score 6 stars 26 scripts 156 downloads 10 exports 81 dependencies

Last updated 9 months agofrom:94eea9a665 (on v0.2.0). Checks:OK: 1 ERROR: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winERROROct 25 2024
R-4.5-linuxERROROct 25 2024
R-4.4-winERROROct 25 2024
R-4.4-macERROROct 25 2024
R-4.3-winERROROct 25 2024
R-4.3-macERROROct 25 2024

Exports:chkpt_brmschkpt_setupchkpt_stancombine_chkpt_drawscreate_folderextract_chkpt_drawsextract_hmc_infoextract_stan_statemake_brmsfitreset_checkpoints

Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscolorspacecrayondescdiffobjdigestdistributionaldplyrfansifarverfsfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnleqslvnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpsQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackrematch2reshape2rlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewaldowithr

checkpointing: brms

Rendered fromchkpt_brms.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-02-27
Started: 2022-04-22

checkpointing: Stan

Rendered fromchkpt_stan.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-02-27
Started: 2022-04-22