Package: chkptstanr 0.2.0

Vencislav Popov

chkptstanr: Checkpoint MCMC Sampling with 'Stan'

Fit Bayesian models in Stan <doi:10.18637/jss.v076.i01> with checkpointing, that is, the ability to stop the MCMC sampler at will, and then pick right back up where the MCMC sampler left off. Custom 'Stan' models can be fitted, or the popular package 'brms' <doi:10.18637/jss.v080.i01> can be used to generate the 'Stan' code. This package is fully compatible with the R packages 'brms', 'posterior', 'cmdstanr', and 'bayesplot'.

Authors:Vencislav Popov [aut, cre, cph], Donald Williams [aut], Tyler Matta [aut], NWEA [cph]

chkptstanr_0.2.0.tar.gz
chkptstanr_0.2.0.zip(r-4.7-any)chkptstanr_0.2.0.zip(r-4.6-any)chkptstanr_0.2.0.zip(r-4.5-any)
chkptstanr_0.2.0.tgz(r-4.6-any)chkptstanr_0.2.0.tgz(r-4.5-any)
chkptstanr_0.2.0.tar.gz(r-4.7-any)chkptstanr_0.2.0.tar.gz(r-4.6-any)
chkptstanr_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
chkptstanr/json (API)

# Install 'chkptstanr' in R:
install.packages('chkptstanr', repos = c('https://popov-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/venpopov/chkptstanr/issues

Pkgdown/docs site:https://venpopov.github.io

On CRAN:

Conda:

4.88 score 9 stars 28 scripts 59 downloads 10 exports 83 dependencies

Last updated from:94eea9a665 (on v0.2.0). Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develERROR234
source / vignettesOK251
linux-releaseERROR232
macos-releaseERROR186
macos-oldrelERROR223
windows-develERROR245
windows-releaseERROR257
windows-oldrelERROR251
wasm-releaseOK147

Exports:chkpt_brmschkpt_setupchkpt_stancombine_chkpt_drawscreate_folderextract_chkpt_drawsextract_hmc_infoextract_stan_statemake_brmsfitreset_checkpoints

Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscpp11crayondescdiffobjdigestdistributionaldplyrfarverfsfuturefuture.applygenericsggdistggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMatrixmatrixStatsmgcvmvtnormnleqslvnlmenumDerivotelparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrquadprogQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackreshape2rlangrstanrstantoolsS7scalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewaldowithr

checkpointing: brms
Packages | Example 1: No Stopping | Model Fitting | Summary | Posterior Predictive Check | Example 2: Stoping, restarting, and resetting | Predetermine stopping point | Reset sampling
Rendered fromchkpt_brms.Rmdusingknitr::rmarkdown

Last update: 2024-02-27
Started: 2022-04-22

checkpointing: Stan
Packages | Example 1: Eight Schools | Storage | Stan Model | Stan Data | Model Fitting | 2 Checkpoints | Finish Sampling | Combine Draws | Summary | Visualization with bayesplot
Rendered fromchkpt_stan.Rmdusingknitr::rmarkdown

Last update: 2024-02-27
Started: 2022-04-22