Package: chkptstanr 0.2.0

Vencislav Popov

chkptstanr: Checkpoint MCMC Sampling with 'Stan'

Fit Bayesian models in Stan <doi:10.18637/jss.v076.i01> with checkpointing, that is, the ability to stop the MCMC sampler at will, and then pick right back up where the MCMC sampler left off. Custom 'Stan' models can be fitted, or the popular package 'brms' <doi:10.18637/jss.v080.i01> can be used to generate the 'Stan' code. This package is fully compatible with the R packages 'brms', 'posterior', 'cmdstanr', and 'bayesplot'.

Authors:Vencislav Popov [aut, cre, cph], Donald Williams [aut], Tyler Matta [aut], NWEA [cph]

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chkptstanr/json (API)

# Install 'chkptstanr' in R:
install.packages('chkptstanr', repos = c('https://popov-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/venpopov/chkptstanr/issues

Pkgdown site:https://venpopov.github.io

On CRAN:

5.04 score 7 stars 26 scripts 216 downloads 10 exports 80 dependencies

Last updated 12 months agofrom:94eea9a665 (on v0.2.0). Checks:1 OK, 7 ERROR. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 22 2025
R-4.5-winERRORFeb 22 2025
R-4.5-macERRORFeb 22 2025
R-4.5-linuxERRORFeb 22 2025
R-4.4-winERRORFeb 22 2025
R-4.4-macERRORFeb 22 2025
R-4.3-winERRORFeb 22 2025
R-4.3-macERRORFeb 22 2025

Exports:chkpt_brmschkpt_setupchkpt_stancombine_chkpt_drawscreate_folderextract_chkpt_drawsextract_hmc_infoextract_stan_statemake_brmsfitreset_checkpoints

Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscolorspacecrayondescdiffobjdigestdistributionaldplyrfansifarverfsfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnleqslvnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpsQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackreshape2rlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewaldowithr

checkpointing: brms

Rendered fromchkpt_brms.Rmdusingknitr::rmarkdownon Feb 22 2025.

Last update: 2024-02-27
Started: 2022-04-22

checkpointing: Stan

Rendered fromchkpt_stan.Rmdusingknitr::rmarkdownon Feb 22 2025.

Last update: 2024-02-27
Started: 2022-04-22