This package is considered a duplicate. The official version of this package is found at:https://cran.r-universe.dev/chkptstanr

Package: chkptstanr 0.2.0

Vencislav Popov

chkptstanr: Checkpoint MCMC Sampling with 'Stan'

Fit Bayesian models in Stan <doi:10.18637/jss.v076.i01> with checkpointing, that is, the ability to stop the MCMC sampler at will, and then pick right back up where the MCMC sampler left off. Custom 'Stan' models can be fitted, or the popular package 'brms' <doi:10.18637/jss.v080.i01> can be used to generate the 'Stan' code. This package is fully compatible with the R packages 'brms', 'posterior', 'cmdstanr', and 'bayesplot'.

Authors:Vencislav Popov [aut, cre, cph], Donald Williams [aut], Tyler Matta [aut], NWEA [cph]

chkptstanr_0.2.0.tar.gz
chkptstanr_0.2.0.zip(r-4.5)chkptstanr_0.2.0.zip(r-4.4)chkptstanr_0.2.0.zip(r-4.3)
chkptstanr_0.2.0.tgz(r-4.4-any)chkptstanr_0.2.0.tgz(r-4.3-any)
chkptstanr_0.2.0.tar.gz(r-4.5-noble)chkptstanr_0.2.0.tar.gz(r-4.4-noble)
chkptstanr_0.2.0.tgz(r-4.4-emscripten)chkptstanr_0.2.0.tgz(r-4.3-emscripten)
chkptstanr.pdf |chkptstanr.html✨
chkptstanr/json (API)

# Install 'chkptstanr' in R:

install.packages('chkptstanr', repos = c('https://popov-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/venpopov/chkptstanr/issues

Pkgdown site:https://venpopov.github.io

On CRAN:

5.04 score 7 stars 26 scripts 152 downloads 10 exports 80 dependencies

Last updated 11 months agofrom:94eea9a665 (on v0.2.0). Checks:1 OK, 6 ERROR. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Dec 24 2024
R-4.5-win	ERROR	Dec 24 2024
R-4.5-linux	ERROR	Dec 24 2024
R-4.4-win	ERROR	Dec 24 2024
R-4.4-mac	ERROR	Dec 24 2024
R-4.3-win	ERROR	Dec 24 2024
R-4.3-mac	ERROR	Dec 24 2024

Exports:chkpt_brms chkpt_setup chkpt_stan combine_chkpt_draws create_folder extract_chkpt_draws extract_hmc_info extract_stan_state make_brmsfit reset_checkpoints

Dependencies:abind backports bayesplot BH bridgesampling brms Brobdingnag callr checkmate cli coda codetools colorspace crayon desc diffobj digest distributional dplyr fansi farver fs future future.apply generics ggplot2 ggridges globals glue gridExtra gtable inline isoband labeling lattice lifecycle listenv loo magrittr MASS Matrix matrixStats mgcv munsell mvtnorm nleqslv nlme numDeriv parallelly pillar pkgbuild pkgconfig plyr posterior processx ps QuickJSR R6 rbibutils RColorBrewer Rcpp RcppEigen RcppParallel Rdpack reshape2 rlang rstan rstantools scales StanHeaders stringi stringr tensorA tibble tidyselect utf8 vctrs viridisLite waldo withr

checkpointing: brms

Rendered fromchkpt_brms.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-02-27
Started: 2022-04-22

checkpointing: Stan

Rendered fromchkpt_stan.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2024-02-27
Started: 2022-04-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Checkpoint Sampling: brms	chkpt_brms
Checkpoint Setup	chkpt_setup
Checkpoint Sampling: Stan	chkpt_stan
Combine Checkpoint Draws	combine_chkpt_draws
Create Folder for Checkpointing (Deprecated)	create_folder
Extract Draws from 'CmdStanMCMC' Objects	extract_chkpt_draws
Extract HMC Sampler Information	extract_hmc_info
Extract Stan State	extract_stan_state
Make 'brmsfit' Object	make_brmsfit
Print 'chkpt_brms' Objects	print.chkpt_brms
Print 'chkpt_setup' Object	print.chkpt_setup
Delete Checkpoint Folders containing samples, keep the model	reset_checkpoints